• Normalizing kernels in the Billera-Holmes-Vogtmann treespace

  Weyenberg, G., Yoshida, R., and Howe, D.
  IEEE/ACM Transactions on Computational Biology and Bioinformatics (2016)
  PDF

• kdetrees: Nonparametric Estimation of Phylogenetic Tree Distributions

  Weyenberg, G., Huggins, P., Schardl, C., Howe, D.K., and Yoshida, R.
  Bioinformatics (2014)
  PDF

• Principal Component Analysis and the Locus of the Frechet Mean in the Space of Phylogenetic Trees

  Nye, T. M. W., Tang, X., Weyenberg, G., and Yoshida, R.
  Biometrika (provisional, minor revisions)
  PDF

• Distances Between Trees

  Weyenberg, G. and Yoshida, R.
  In Encyclopedia of Evolutionary Biology, Kliman, Richard, ed. (2017) Elsevier.

• Reconstructing the Phylogeny: Computational Methods

  Weyenberg, G. and Yoshida, R.
  In Algebraic and Discrete Mathematical Methods for Modern Biology, Robeva, Raina, ed. (2015) Elsevier.